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Please see: for information about optimizing performance. The BEAGLE libraries will be available when you load the BEAST module and BEAGLE is enabled used by default. There are BEAGLE options such as -beage_SSE which may help performance.


To add a beast add-on use the following command after you've loaded the beast module (module load bioinformatics/beast) first list available add-ons:

packagemanager -list

and then add one with

packagemanager -add SNAPP

The add-on will be downloaded to ~/.beast

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