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Performance

Please see: http://www.beast2.org/performance-suggestions/index.html for information about optimizing performance. The BEAGLE libraries will be available when you load the BEAST module and BEAGLE is enabled used by default. There are BEAGLE options such as -beage_SSE which may help performance.

Add-ons

To add a beast add-on use the following command after you've loaded the beast module (module load bioinformatics/beast) first list available add-ons:

packagemanager -list

and then add one with

packagemanager -add SNAPP

The add-on will be downloaded to ~/.beast

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