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Comment: Added blast 2.6.0

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SoftwareVersionModuleNotes
Augustus3.3.2bioinformatics/augustus/3.3.2installed with conda
bbmap38.67bioinformatics/bbmap/38.67installed with conda; environment 'bbmap_38.67'
bcftools1.9bioinformatics/bcftools/1.9gcc 7.3.0
Beagle3.2bioinformatics/beagle/3.2gcc 7.3.0
Beast

1.10.4

2.6.0

bioinformatics/beast/1.10.4

bioinformatics/beast/2.6.0

java 1.8.0_45

java 1.8.0_45

bedtools2.28.0bioinformatics/bedtools/2.28.0installed with conda
bioperl1.7.2bioinformatics/bioperl/1.7.2installed with conda; environment 'bioperl_1.7.2'
biopython1.74bioinformatics/biopython/1.74installed with conda; environment 'biopython_1.74'
blasr

5.3.3

5.0

bioinformatics/blasr/5.3.3

bioinformatics/blasr/5.0

installed with conda

transferred from Hydra-4

BLAST

2.6.0

2.9.0

2.8.1

bioinformatics/blast/2.6.0

bioinformatics/blast/2.9.0

bioinformatics/blast/2.8.1

gcc 7.3.0

gcc 7.3.0

gcc 7.3.0

blat36bioinformatics/blat/36installed with conda
BlobTools1.0.1bioinformatics/blobtools/1.0.1installed with conda; environment 'blobtools_1.0.1'
Bowtie22.3.5bioinformatics/bowtie2/2.3.5installed with conda
BUSCO3.0.2bioinformatics/busco/3.0.2installed with conda; environment 'busco_3.0.2'
BWA0.7.17bioinformatics/bwa/0.7.17gcc 7.3.0
cactus2019.03.01bioinformatics/cactus/2019.03.01installed with conda; environment 'cactus_2019.03.01'
canu1.8bioinformatics/canu/1.8gcc 7.3.0
Cutadapt2.4bioinformatics/cutadapt/2.4installed with conda
FastQC0.11.8bioinformatics/fastqc/0.11.8java 1.8
GATK

3.8.1.0

4.1.3.0

bioinformatics/gatk/3.8.1.0

bioinformatics/gatk/4.1.3.0

java 1.8

java 1.8

Gblocks0.91bbioinformatics/gblocks/0.91bbioperl added to module
GetOrganelle1.6.2dbioinformatics/getorganelle/1.6.2dinstalled with conda
hmmer3.2.1bioinformatics/hmmer/3.2.1gcc 7.3.0
htslib1.9bioinformatics/htslib/1.9gcc 7.3.0
HybPiper1.3bioinformatics/hybpiper/1.3dependencies installed with conda; environment 'hybpiper'
HyPhy2.5.1bioinformatics/hyphy/2.5.1installed with conda; environment 'hyphy_2.5.1'
IMPUTE22.3.2bioinformatics/shapeit/2.r837installed with conda; environment 'shapeit_2.r837'
ipyrad

0.7.30

0.9.12

bioinformatics/ipyrad/0.7.30

bioinformatics/ipyrad/0.9

installed with conda; environment 'ipyrad_0.7.30'

installed with conda; environment 'ipyrad_0.9'

IQ-TREE1.6.12bioinformatics/iqtree/1.6.12precompiled
JBrowse1.16.6bioinformatics/jbrowse/1.16.6installed with conda; environment 'jbrowse_1.16.6'
jellyfish2.3.0bioinformatics/jellyfish/2.3.0gcc 7.3.0
julia1.2.0bioinformatics/julia/1.2.0gcc 7.3.0
MAFFT7.407bioinformatics/mafft/7.407installed with conda
MaSuRCA3.3.3bioinformatics/masurca/3.3.3gcc 7.3.0
MrBayes3.2.7abioinformatics/mrbayes/3.2.7agcc 7.3.0, mvapich 7.3
migrate

3.7.2

4.4.4

3.6.11

bioinformatics/migrate/3.7.2

bioinformatics/migrate/4.4.4

bioinformatics/migrate/3.6.11

gcc 7.3.0, mpich 7.3

gcc 7.3.0, mpich 7.3

gcc 4.9.2 (no MPI version)

Orthofinder2.2.7bioinformatics/orthofinder/2.2.7installed with conda; environment 'orthofinder_2.2.7'
OrthoMCL2.0.9bioinformatics/orthomcl/2.0.9

installed with conda; environment 'orthomcl_2.0.9'

PAML4.9bioinformatics/paml/4.9installed with conda; environment 'paml_4.9'
Partitionfinder2.1.1bioinformatics/partitionfinder/2.1.1added python 2.7 to module
Phylobayes4.1cbioinformatics/phylobayes/4.1cinstalled with conda; environment 'phylobayes_4.1c'
Phyluce

1.6.7

1.5_tg

bioinformatics/phyluce/1.6.7

bioinformatics/phyluce/1.5_tg

installed with conda; environment 'phyluce_1.6.7'

transferred from Hydra-4

Picard-tools2.20.6bioinformatics/picard-tools/2.20.6java 1.8
Pilon1.23bioinformatics/pilon/1.23java 1.8
Proteinortho6.0.6bioinformatics/proteinortho/6.0.6installed with conda; environment 'proteinortho_6.0.6'
PSMC0.6.5bioinformatics/psmc/0.6.5gcc 7.3.0
Python

2.7

2.7_mpi

3.6

bioinformatics/python/2.7

bioinformatics/python/2.7_mpi

bioinformatics/python/3.6

installed with conda; environment 'py2'

installed with conda; environment 'py2_mpi'

installed with conda; environment 'py3'

QIIME22019.7bioinformatics/qiime2/2019.7installed with conda; environment 'qiime2-2019.7'
R3.6.1bioinformatics/R/3.6.1gcc 7.3.0, java 1.8
RAxML

8.2.12

8.2.12-mpi

ng-0.9.0

bioinformatics/raxml/8.2.12

bioinformatics/raxml/8.2.12-mpi

bioinformatics/raxml/ng-0.9.0

gcc 7.3.0

mpich 7.3

precompiled

RepeatMasker4.0.9bioinformatics/repeatmasker/4.0.9
revbayes1.0.11bioinformatics/revbayes/1.0.11gcc 4.9.2, cmake 3.31
Ruby2.6.3bioinformatics/ruby/2.6.3gcc 7.3.0
salmon0.14.1bioinformatics/salmon/0.14.1installed with conda; environment 'salmon_0.14.1'

SHAPEIT

2.r837

bioinformatics/shapeit/2.r837installed with conda; environment 'shapeit_2.r837'
smc++1.15.2bioinformatics/smc++/1.15.2installed with conda; environment 'smc++_1.15.2'
Stacks

1.48

2.4.1

bioinformatics/stacks/1.48

bioinformatics/stacks/2.4.1

gcc 7.3.0

gcc 7.3.0

Structure2.3.4bioinformatics/structure/2.3.4
Supernova2.1.1bioinformatics/supernova/2.1.1precompiled
Transdecoder5.5.0bioinformatics/transdecoder/5.5.0bioperl, BLAST added to module
TrimGalore!0.6.4bioinformatics/trim_galore/0.6.4FastQC, Cutadapt added to module
Trimmomatic0.39bioinformatics/trimmomatic/0.39

java 1.8

Trinity

2.8.5

r2013_2_25

bioinformatics/trinity/2.8.5

bioinformatics/trinity/r2013_2_25

installed with conda; environment 'trinity_2.8.5'

transferred from Hydra-4

Trinotate3.2.0bioinformatics/trinotate/3.2.0bioperl added to module
vcflib1.0.0-rc3bioinformatics/vcflib/1.0.0-rc3gcc 7.3.0
vcftools0.1.16bioinformatics/vcftools/0.1.16gcc 7.3.0

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